# DREME 5.1.0 # command: dreme -p result50.txt -oc u50 -dna -norc -png -k 6 # positives: 2566 from result50.txt (Fri Jun 26 02:41:09 CST 2020) # negatives: 2566 from shuffled positives # host: ubuntu # when: Fri Jun 26 03:16:33 CST 2020 MEME version 5.1.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + Background letter frequencies (from dataset): A 0.270 C 0.235 G 0.251 T 0.244 MOTIF AGAARM DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AGAARM KYTTCT 387 232 1.7e-011 7.0e-008 # AGAAGA TCTTCT 125 68 1.8e-005 7.4e-002 # AGAAGC GCTTCT 88 45 1.0e-004 4.2e-001 # AGAAAC GTTTCT 90 50 3.9e-004 1.6e+000 # AGAAAA TTTTCT 123 87 6.7e-003 2.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 428 E= 7.0e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.495327 0.000000 0.504673 0.000000 0.598131 0.401869 0.000000 0.000000 MOTIF ACCWTC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST ACCWTC GAWGGT 92 33 4.4e-008 1.8e-004 # ACCATC GATGGT 51 18 3.9e-005 1.6e-001 # ACCTTC GAAGGT 41 15 3.2e-004 1.3e+000 letter-probability matrix: alength= 4 w= 6 nsites= 94 E= 1.8e-004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.563830 0.000000 0.000000 0.436170 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GGWGGA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GGWGGA TCCWCC 171 87 4.5e-008 1.9e-004 # GGAGGA TCCTCC 106 56 4.1e-005 1.7e-001 # GGTGGA TCCACC 69 36 7.4e-004 3.1e+000 letter-probability matrix: alength= 4 w= 6 nsites= 186 E= 1.9e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.618280 0.000000 0.000000 0.381720 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AATAAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AATAAA TTTATT 127 59 2.1e-007 8.8e-004 # AATAAA TTTATT 127 59 2.1e-007 8.8e-004 letter-probability matrix: alength= 4 w= 6 nsites= 127 E= 8.8e-004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ABCAGC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ABCAGC GCTGVT 191 106 2.2e-007 8.9e-004 # AGCAGC GCTGCT 90 49 2.7e-004 1.1e+000 # ATCAGC GCTGAT 47 24 4.1e-003 1.7e+001 # ACCAGC GCTGGT 64 37 4.3e-003 1.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 204 E= 8.9e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.426471 0.240196 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GGCTTY DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GGCTTY RAAGCC 95 40 9.1e-007 3.7e-003 # GGCTTC GAAGCC 46 17 1.5e-004 6.3e-001 # GGCTTT AAAGCC 50 23 9.8e-004 4.0e+000 letter-probability matrix: alength= 4 w= 6 nsites= 96 E= 3.7e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.479167 0.000000 0.520833 MOTIF CCKGGA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CCKGGA TCCMGG 115 55 1.7e-006 6.9e-003 # CCTGGA TCCAGG 84 44 2.2e-004 8.9e-001 # CCGGGA TCCCGG 31 11 1.4e-003 5.7e+000 letter-probability matrix: alength= 4 w= 6 nsites= 119 E= 6.9e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TAYTAC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST TAYTAC GTARTA 61 21 4.8e-006 2.0e-002 # TATTAC GTAATA 39 14 3.8e-004 1.5e+000 # TACTAC GTAGTA 23 7 2.5e-003 1.0e+001 letter-probability matrix: alength= 4 w= 6 nsites= 61 E= 2.0e-002 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.360656 0.000000 0.639344 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 18.36 seconds